Experiment Report Writer

by thc1006

skill

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Skill Details

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name: experiment-report-writer description: > Write structured experiment sections (methods + results + discussion) for NQS + SQD projects in this repository, based on contents of results/ and figures/. license: Proprietary. For internal research writeups only.

Experiment Report Writer

Purpose

Given:

  • processed result tables in results/processed/ (CSV / Parquet),
  • plots in results/figures/,

produce structured write-ups that could be dropped into a paper, report, or slide deck.

Output Format

When asked to summarize experiments, produce:

  1. Experimental setup

    • Molecule, encoding (e.g. 12-bit H₂), Hamiltonian details if provided.
    • NQS architecture (FFNN / Transformer; layers, heads, hidden sizes).
    • SQD configuration (sample counts, iteration limits, configuration recovery, etc.).
  2. Results

    • Tables summarizing:
      • estimated energies and reference values,
      • bias / RMSE vs. reference,
      • variance and empirical confidence intervals.
    • Short bullet list of main numerical observations.
  3. Discussion

    • Interpretation of trends (e.g., how NQS helps or fails under low sample counts).
    • Hypothesized causes of discrepancies.
    • Concrete suggestions for follow-up experiments.

Instructions

  • Read the relevant result files before writing.
  • For each figure, include:
    • what is plotted on each axis,
    • key trends,
    • any notable anomalies.
  • If some information is missing, explicitly state assumptions.

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Skill Information

Category:Skill
License:Proprietary. For internal research writeups only.
Last Updated:11/28/2025