Effect Size
by astoreyai
Calculate and interpret effect sizes for statistical analyses. Use when: (1) Reporting research results to show practical significance, (2) Meta-analysis to combine study results, (3) Grant writing to justify expected effects, (4) Interpreting published studies beyond p-values, (5) Sample size planning for power analysis.
Skill Details
Repository Files
1 file in this skill directory
name: effect-size description: "Calculate and interpret effect sizes for statistical analyses. Use when: (1) Reporting research results to show practical significance, (2) Meta-analysis to combine study results, (3) Grant writing to justify expected effects, (4) Interpreting published studies beyond p-values, (5) Sample size planning for power analysis." allowed-tools: Read, Write version: 1.0.0
Effect Size Calculation Skill
Purpose
Calculate standardized effect sizes to quantify the magnitude of research findings. Essential for reporting practical significance beyond p-values.
Common Effect Size Measures
Cohen's d (Mean Differences)
Use: T-tests, group comparisons on continuous outcomes
d = (M₁ - M₂) / SD_pooled
Interpretation:
- Small: d = 0.2
- Medium: d = 0.5
- Large: d = 0.8
Pearson's r (Correlations)
Interpretation:
- Small: r = 0.10
- Medium: r = 0.30
- Large: r = 0.50
Eta-squared (η²) and Partial Eta-squared (η²ₚ)
Use: ANOVA, variance explained
η² = SS_effect / SS_total
η²ₚ = SS_effect / (SS_effect + SS_error)
Interpretation:
- Small: η² = 0.01
- Medium: η² = 0.06
- Large: η² = 0.14
Odds Ratio (OR) and Risk Ratio (RR)
Use: Binary outcomes, clinical trials
OR = (a/b) / (c/d) [from 2x2 table]
Interpretation:
- OR = 1: No effect
- OR > 1: Increased odds
- OR < 1: Decreased odds
Always Report with Confidence Intervals
Example: d = 0.52, 95% CI [0.28, 0.76]
This shows:
- Best estimate: d = 0.52 (medium effect)
- Precision: CI width suggests adequate sample size
- Excludes zero: Effect is statistically significant
Integration
Use with power-analysis skill for study planning and with statistical analysis for results reporting.
Version: 1.0.0
Related Skills
Attack Tree Construction
Build comprehensive attack trees to visualize threat paths. Use when mapping attack scenarios, identifying defense gaps, or communicating security risks to stakeholders.
Grafana Dashboards
Create and manage production Grafana dashboards for real-time visualization of system and application metrics. Use when building monitoring dashboards, visualizing metrics, or creating operational observability interfaces.
Matplotlib
Foundational plotting library. Create line plots, scatter, bar, histograms, heatmaps, 3D, subplots, export PNG/PDF/SVG, for scientific visualization and publication figures.
Scientific Visualization
Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.
Seaborn
Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted plots, for exploratory analysis and publication figures.
Shap
Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model
Pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
Query Writing
For writing and executing SQL queries - from simple single-table queries to complex multi-table JOINs and aggregations
Pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
Scientific Visualization
Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and specific journal formatting (Nature, Science, Cell). Orchestrates matplotlib/seaborn/plotly with publication styles. For quick exploration use seaborn or plotly directly.
